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remove the SQLite installation pls. You can get the SQLite Interop dll's from (you need an account to see links)
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Strictly speaking, there is no need to install System.Data.SQLite on any end-user machine (e.g. via the setup). The recommended way to deploy the assemblies is "application local" (i.e. copy them to the directory the application is installed to). Installing the assemblies into the Global Assembly Cache is not recommended as it may cause conflicts with other applications installed on the machine.